Wu, K.,
Gauthier, D., and
Levine, M.,
Live cell image segmentation,
BiomedEng(42), No. 1, 1995, pp. 1-12.
BibRef
9500
Cavallo, A.,
Solovei, I.,
Schermeleh, L.,
Heintzmann, R.,
Cremer, T.,
Cremer, C.,
A Hybrid Approach to the 3D High Precision Position Measurement and
Particle Tracking in Human Cell Nuclei,
RealTimeImg(8), No. 6, December 2002, pp. 467-473.
DOI Link
0304
BibRef
Debeir, O.,
VanHam, P.,
Kiss, R.,
Decaestecker, C.,
Tracking of Migrating Cells Under Phase-Contrast Video Microscopy With
Combined Mean-Shift Processes,
MedImg(24), No. 6, June 2005, pp. 697-711.
IEEE Abstract.
0506
BibRef
Matula, P.,
Kozubek, M.,
Dvorak, V.,
Fast Point-Based 3-D Alignment of Live Cells,
IP(15), No. 8, August 2006, pp. 2388-2396.
IEEE DOI
0606
BibRef
Ayala, G.[Guillermo],
Sebastian, R.[Rafael],
Díaz, M.E.[María Elena],
Díaz, E.[Ester],
Zoncu, R.[Roberto],
Toomre, D.[Derek],
Analysis of Spatially and Temporally Overlapping Events with
Application to Image Sequences,
PAMI(28), No. 10, October 2006, pp. 1707-1712.
IEEE DOI
0609
Analysis of cells.
See also Studying endocytosis in space and time by means of temporal Boolean models.
BibRef
Díaz, E.[Ester],
Sebastian, R.[Rafael],
Ayala, G.[Guillermo],
Díaz, M.E.[María Elena],
Zoncu, R.[Roberto],
Toomre, D.[Derek],
Gasman, S.[Stéphane],
Measuring Spatiotemporal Dependencies in Bivariate Temporal Random Sets
with Applications to Cell Biology,
PAMI(30), No. 9, September 2008, pp. 1659-1671.
IEEE DOI
0808
Interdependency of proteins.
BibRef
Bhaskar, H.[Harish],
Singh, S.[Sameer],
Live cell imaging: a computational perspective,
RealTimeIP(1), No. 3, April 2007, pp. 195-212.
Springer DOI
0001
BibRef
Zhang, B.,
Fadili, J.M.,
Starck, J.L.,
Olivo-Marin, J.C.,
Multiscale Variance-Stabilizing Transform for Mixed-Poisson-Gaussian
Processes and its Applications in Bioimaging,
ICIP07(VI: 233-236).
IEEE DOI
0709
BibRef
Genovesio, A.,
Zhang, B.,
Olivo-Marin, J.C.,
Tracking of multiple fluorescent biological objects in three
dimensional video microscopy,
ICIP03(I: 1105-1108).
IEEE DOI
0312
BibRef
Moon, I.,
Daneshpanah, M.,
Javidi, B.,
Stern, A.,
Automated Three-Dimensional Identification and Tracking of
Micro/Nanobiological Organisms by Computational Holographic Microscopy,
PIEEE(97), No. 6, June 2009, pp. 990-1010.
IEEE DOI
0905
BibRef
Deneux, T.,
Faugeras, O.D.,
Takerkart, S.,
Masson, G.S.,
Vanzetta, I.,
A New Variational Method for Erythrocyte Velocity Estimation in
Wide-Field Imaging In Vivo,
MedImg(30), No. 8, August 2011, pp. 1527-1545.
IEEE DOI
1108
BibRef
Sargin, M.E.,
Altinok, A.,
Manjunath, B.S.,
Rose, K.,
Variable Length Open Contour Tracking Using a Deformable Trellis,
IP(20), No. 4, April 2011, pp. 1023-1035.
IEEE DOI
1103
BibRef
Earlier: A1, A2, A4, A3:
Tracing Curvilinear Structures in Live Cell Images,
ICIP07(VI: 285-288).
IEEE DOI
0709
BibRef
Sargin, M.E.,
Ghosh, P.,
Manjunath, B.S.,
Rose, K.,
Object Tracking with Ratio Cycles Using Shape and Appearance Cues,
ICPR10(3649-3652).
IEEE DOI
1008
BibRef
Koulgi, P.[Pradeep],
Sargin, M.E.[Mehmet Emre],
Rose, K.[Kenneth],
Manjunath, B.S.,
Graphical Model-Based Tracking of Curvilinear Structures in Bio-image
Sequences,
ICPR10(2596-2599).
IEEE DOI
1008
BibRef
Dufour, A.,
Thibeaux, R.,
Labruyere, E.,
Guillen, N.,
Olivo-Marin, J.C.,
3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in
3-D Time-Lapse Microscopy,
IP(20), No. 7, July 2011, pp. 1925-1937.
IEEE DOI
1107
BibRef
Suresh, R.M.,
Jayalakshmi, N.,
Segmentation and Tracking of Progenitor Cells in Time Lapse Microscopy,
IJIG(12), No. 1, January 2012, pp. 1250008.
DOI Link
1203
BibRef
van de Giessen, M.,
van der Laan, A.,
Hendriks, E.A.,
Vidorreta, M.,
Reiber, J.H.C.,
Jost, C.R.,
Tanke, H.J.,
Lelieveldt, B.P.F.[Boudewijn P. F.],
Fully Automated Attenuation Measurement and Motion Correction in FLIP
Image Sequences,
MedImg(31), No. 2, February 2012, pp. 461-473.
IEEE DOI
1202
FLIP: Fluorescence loss in photobleaching
BibRef
Sethuraman, V.[Vijaya],
French, A.[Andrew],
Wells, D.[Darren],
Kenobi, K.[Kim],
Pridmore, T.[Tony],
Tissue-level segmentation and tracking of cells in growing plant roots,
MVA(23), No. 4, July 2012, pp. 639-658.
WWW Link.
1206
BibRef
Kan, A.[Andrey],
Leckie, C.[Christopher],
Bailey, J.[James],
Markham, J.[John],
Chakravorty, R.[Rajib],
Measures for ranking cell trackers without manual validation,
PR(46), No. 11, November 2013, pp. 2849-2859.
Elsevier DOI
1306
Cell tracking; Data association; Tracking quality;
Performance measures; Tracker selection; Bayes theorem
BibRef
Kan, A.[Andrey],
Markham, J.[John],
Chakravorty, R.[Rajib],
Bailey, J.[James],
Leckie, C.[Christopher],
Ranking cell tracking systems without manual validation,
PRL(53), No. 1, 2015, pp. 38-43.
Elsevier DOI
1502
Cell tracking
BibRef
Fasciano, T.[Thomas],
Souvenir, R.[Richard],
Shin, M.C.[Min C.],
Learning to rank biological motion trajectories,
IVC(31), No. 6-7, June-July 2013, pp. 502-510.
Elsevier DOI
1306
Biomedical imaging; Motion analysis; Cell motion; Rank-based
learning
BibRef
Möller, M.[Michael],
Burger, M.[Martin],
Dieterich, P.[Peter],
Schwab, A.[Albrecht],
A framework for automated cell tracking in phase contrast microscopic
videos based on normal velocities,
JVCIR(25), No. 2, 2014, pp. 396-409.
Elsevier DOI
1402
Cell tracking
BibRef
Liang, L.[Liang],
Shen, H.Y.[Hong-Ying],
de Camilli, P.,
Duncan, J.S.,
A Novel Multiple Hypothesis Based Particle Tracking Method for
Clathrin Mediated Endocytosis Analysis Using Fluorescence Microscopy,
IP(23), No. 4, April 2014, pp. 1844-1857.
IEEE DOI
1404
Gaussian processes
BibRef
Lou, X.,
Schiegg, M.[Martin],
Hamprecht, F.A.[Fred A.],
Active Structured Learning for Cell Tracking:
Algorithm, Framework, and Usability,
MedImg(33), No. 4, April 2014, pp. 849-860.
IEEE DOI
1404
Data models
BibRef
Diego, F.[Ferran],
Hamprecht, F.A.[Fred A.],
Structured Regression Gradient Boosting,
CVPR16(1459-1467)
IEEE DOI
1612
BibRef
Schiegg, M.[Martin],
Diego, F.[Ferran],
Hamprecht, F.A.[Fred A.],
Learning Diverse Models: The Coulomb Structured Support Vector Machine,
ECCV16(III: 585-599).
Springer DOI
1611
BibRef
Magnusson, K.E.G.,
Jalden, J.,
Gilbert, P.M.,
Blau, H.M.,
Global Linking of Cell Tracks Using the Viterbi Algorithm,
MedImg(34), No. 4, April 2015, pp. 911-929.
IEEE DOI
1504
Clustering algorithms
BibRef
Rezatofighi, S.H.,
Gould, S.,
Vo, B.T.[Ba Tuong],
Vo, B.N.[Ba-Ngu],
Mele, K.,
Hartley, R.,
Multi-Target Tracking With Time-Varying Clutter Rate and Detection
Profile: Application to Time-Lapse Cell Microscopy Sequences,
MedImg(34), No. 6, June 2015, pp. 1336-1348.
IEEE DOI
1506
Bayes methods
BibRef
Reiter, M.[Michael],
Rota, P.[Paolo],
Kleber, F.[Florian],
Diem, M.[Markus],
Groeneveld-Krentz, S.[Stefanie],
Dworzak, M.[Michael],
Clustering of cell populations in flow cytometry data using a
combination of Gaussian mixtures,
PR(60), No. 1, 2016, pp. 1029-1040.
Elsevier DOI
1609
Gaussian mixture model
BibRef
Weijler, L.[Lisa],
Diem, M.[Markus],
Reiter, M.[Michael],
Maurer-Granofszky, M.[Margarita],
Detecting Rare Cell Populations in Flow Cytometry Data Using UMAP,
ICPR21(4903-4909)
IEEE DOI
2105
Training, Manifolds, Dimensionality reduction, Sociology,
Training data, Data mining, Statistics
BibRef
Chen, J.,
Alber, M.S.,
Chen, D.Z.,
A Hybrid Approach for Segmentation and Tracking of Myxococcus Xanthus
Swarms,
MedImg(35), No. 9, September 2016, pp. 2074-2084.
IEEE DOI
1609
Active contours.
BibRef
Tambo, A.L.,
Bhanu, B.,
Modeling and Classifying Tip Dynamics of Growing Cells in Video,
SPLetters(23), No. 10, October 2016, pp. 1369-1373.
IEEE DOI
1610
cellular biophysics
BibRef
Tektonidis, M.,
Rohr, K.,
Diffeomorphic Multi-Frame Non-Rigid Registration of Cell Nuclei in 2D
and 3D Live Cell Images,
IP(26), No. 3, March 2017, pp. 1405-1417.
IEEE DOI
1703
biomedical optical imaging
BibRef
He, T.[Tao],
Mao, H.[Hua],
Guo, J.X.[Ji-Xiang],
Yi, Z.[Zhang],
Cell tracking using deep neural networks with multi-task learning,
IVC(60), No. 1, 2017, pp. 142-153.
Elsevier DOI
1704
Cell tracking
BibRef
Türetken, E.,
Wang, X.,
Becker, C.J.,
Haubold, C.,
Fua, P.,
Network Flow Integer Programming to Track Elliptical Cells in
Time-Lapse Sequences,
MedImg(36), No. 4, April 2017, pp. 942-951.
IEEE DOI
1704
Image segmentation
BibRef
Liu, M.,
Wei, Y.,
Qian, W.,
Zhang, H.,
Robust Plant Cell Tracking in Noisy Image Sequences Using Optimal CRF
Graph Matching,
SPLetters(24), No. 8, August 2017, pp. 1168-1172.
IEEE DOI
1708
biological techniques, biological tissues, biology computing,
cellular biophysics, graph theory, image matching, image sequences,
object tracking, spatiotemporal phenomena,
conditional random field graph method,
high-throughput spatiotemporal quantitative measurements,
multicellular tissues, neighboring cells spatial topology,
noisy image sequence, optimal CRF graph matching,
robust plant cell tracking, second-order potential,
time-lapse live-imaging datasets,
tracking accuracy rate improvement, tracking error reduction,
tracking stability enhancement, Image edge detection,
Image segmentation, Labeling, Noise measurement, Pipelines, Shape,
Tracking, Cell tracking, conditional random field,
local graph matching, noisy, images
BibRef
Sgouralis, I.[Ioannis],
Nebenführ, A.[Andreas],
Maroulas, V.[Vasileios],
A Bayesian Topological Framework for the Identification and
Reconstruction of Subcellular Motion,
SIIMS(10), No. 2, 2017, pp. 871-899.
DOI Link
1708
BibRef
Wan, J.Q.[Jiu-Qing],
Chen, X.[Xu],
Zeng, X.H.[Xian-Hang],
Cell tracking via Structured Prediction and Learning,
MVA(28), No. 8, November 2017, pp. 859-874.
WWW Link.
1710
BibRef
Urbano, L.F.,
Masson, P.,
VerMilyea, M.,
Kam, M.,
Automatic Tracking and Motility Analysis of Human Sperm in Time-Lapse
Images,
MedImg(36), No. 3, March 2017, pp. 792-801.
IEEE DOI
1703
Algorithm design and analysis
BibRef
Dai, C.,
Zhang, Z.,
Huang, J.,
Wang, X.,
Ru, C.,
Pu, H.,
Xie, S.,
Zhang, J.,
Moskovtsev, S.,
Librach, C.,
Jarvi, K.,
Sun, Y.,
Automated Non-Invasive Measurement of Single Sperm's Motility and
Morphology,
MedImg(37), No. 10, October 2018, pp. 2257-2265.
IEEE DOI
1810
Morphology, Switches, Head, Target tracking, Position measurement,
Trajectory, Measurement uncertainty, Cell tracking, sperm motility,
automated measurement
BibRef
Lee, J.,
Kolb, I.,
Forest, C.R.,
Rozell, C.J.,
Cell Membrane Tracking in Living Brain Tissue Using Differential
Interference Contrast Microscopy,
IP(27), No. 4, April 2018, pp. 1847-1861.
IEEE DOI
1802
Matlab, biological techniques, biological tissues,
biology computing, biomedical optical imaging, brain,
sparse dynamical signal estimation
BibRef
Hesar, H.D.[Hamed Danandeh],
Abrishami Moghaddam, H.[Hamid],
Safari, A.[Amirhossein],
Eftekhari-Yazdi, P.[Poopak],
Multiple sperm tracking in microscopic videos using modified GM-PHD
filter,
MVA(29), No. 3, April 2018, pp. 433-451.
Springer DOI
1804
BibRef
And:
Correction:
MVA(29), No. 3, April 2018, pp. 453.
Springer DOI
1804
BibRef
Liu, M.[Min],
Li, J.Q.[Jie-Qin],
Qian, W.L.[Wei-Li],
A multi-seed dynamic local graph matching model for tracking of densely
packed cells across unregistered microscopy image sequences,
MVA(29), No. 8, November 2018, pp. 1237-1247.
WWW Link.
1811
BibRef
Yu, S.,
Lu, Y.,
Molloy, D.,
A Dynamic-Shape-Prior Guided Snake Model With Application in Visually
Tracking Dense Cell Populations,
IP(28), No. 3, March 2019, pp. 1513-1527.
IEEE DOI
1812
cellular biophysics, deformation, gradient methods,
image representation, image segmentation, image sequences,
global-topology regularity
BibRef
Sorokin, D.V.,
Peterlík, I.,
Ulman, V.,
Svoboda, D.,
Necasová, T.,
Morgaenko, K.,
Eiselleová, L.,
Tesarová, L.,
Maška, M.,
FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse
Sequences of Single Motile Cells With Growing and Branching Filopodia,
MedImg(37), No. 12, December 2018, pp. 2630-2641.
IEEE DOI
1812
Solid modeling, Biomedical imaging,
Polymers, Deformable models, Microscopy, Strain, Simulation,
filopodium evolution
BibRef
Lang, L.F.[Lukas F.],
A Numerical Framework for Efficient Motion Estimation on Evolving
Sphere-Like Surfaces Based on Brightness and Mass Conservation Laws,
SIIMS(12), No. 1, 2019, pp. 459-491.
DOI Link
1904
BibRef
Kheirkhah, F.M.[Fateme Mostajer],
Mohammadi, H.R.S.[Hamid Reza Sadegh],
Shahverdi, A.[Abdolhossein],
Efficient and robust segmentation and tracking of sperm cells in
microscopic image sequences,
IET-CV(13), No. 5, August 2019, pp. 489-499.
DOI Link
1908
BibRef
Phan, H.T.H.,
Kumar, A.,
Feng, D.,
Fulham, M.,
Kim, J.,
Unsupervised Two-Path Neural Network for Cell Event Detection and
Classification Using Spatiotemporal Patterns,
MedImg(38), No. 6, June 2019, pp. 1477-1487.
IEEE DOI
1906
Computer architecture, Microprocessors, Videos, Event detection,
Neural networks, Feature extraction,
pattern recognition and classification
BibRef
Demir, H.S.[H. Seckin],
Cetin, A.E.[A. Enis],
Atalay, R.C.[Rengul Cetin],
A visual object tracking benchmark for cell motility in time-lapse
imaging,
SIViP(13), No. 6, September 2019, pp. 1063-1070.
WWW Link.
1908
BibRef
Jiang, W.B.[Wen-Bo],
Wu, L.H.[Le-Hui],
Liu, S.H.[Shi-Hui],
Liu, M.[Min],
CNN-based two-stage cell segmentation improves plant cell tracking,
PRL(128), 2019, pp. 311-317.
Elsevier DOI
1912
CNN, Cell segmentation, Cell tracking, Local graph matching
BibRef
Spilger, R.,
Imle, A.,
Lee, J.,
Müller, B.,
Fackler, O.T.,
Bartenschlager, R.,
Rohr, K.,
A Recurrent Neural Network for Particle Tracking in Microscopy Images
Using Future Information, Track Hypotheses, and Multiple Detections,
IP(29), 2020, pp. 3681-3694.
IEEE DOI
2002
Biomedical imaging, microscopy images, particle tracking, deep learning
BibRef
Vahid, M.R.[Milad R.],
Hanzon, B.[Bernard],
Ober, R.J.[Raimund J.],
Fisher Information Matrix for Single Molecules with Stochastic
Trajectories,
SIIMS(13), No. 1, 2020, pp. 234-264.
DOI Link
2004
BibRef
Sixta, T.[Tomáš],
Cao, J.H.[Jia-Hui],
Seebach, J.[Jochen],
Schnittler, H.[Hans],
Flach, B.[Boris],
Coupling cell detection and tracking by temporal feedback,
MVA(31), No. 4, April 2020, pp. Article24.
Springer DOI
2005
BibRef
Masoudi, S.[Samira],
Razi, A.[Afsaneh],
Wright, C.H.G.[Cameron H. G.],
Gatlin, J.C.[Jesse C.],
Bagci, U.[Ulas],
Instance-Level Microtubule Tracking,
MedImg(39), No. 6, June 2020, pp. 2061-2075.
IEEE DOI
2006
Microtubules, TIRF microscopy, instance-level segmentation,
instance-level sub-cellular tracking, microtubule-microtubule interaction
BibRef
Zhang, Y.[Yuan],
Chen, J.[Jin],
Pan, X.Z.[Xian-Zhu],
Multi-feature fusion of deep networks for mitosis segmentation in
histological images,
IJIST(31), No. 2, 2021, pp. 562-574.
DOI Link
2105
deep learning, feature fusion, handcrafted features,
histological images, knowledge transfer, mitotic cell
BibRef
Vandaele, R.[Robin],
Rieck, B.[Bastian],
Saeys, Y.[Yvan],
de Bie, T.[Tijl],
Stable topological signatures for metric trees through graph
approximations,
PRL(147), 2021, pp. 85-92.
Elsevier DOI
2106
Topological data analysis, Algebraic topology,
Persistent homology, Proximity graphs, Metric trees, Cell trajectory inference
BibRef
Alabdulla, A.A.[Ahmad Alhaj],
Hasiloglu, A.[Abdulsamet],
Aksu, E.H.[Emrah Hicazi],
A robust sperm cell tracking algorithm using uneven lighting image
fixing and improved branch and bound algorithm,
IET-IPR(15), No. 9, 2021, pp. 2068-2079.
DOI Link
2106
BibRef
Zhu, R.H.[Rong-Hua],
Cui, Y.S.[Yan-Song],
Hou, E.[Enyu],
Huang, J.M.[Jian-Ming],
Efficient detection and robust tracking of spermatozoa in microscopic
video,
IET-IPR(15), No. 13, 2021, pp. 3200-3210.
DOI Link
2110
non-specific aggregation, sperm cell detection,
sperm head segmentation, sperm tracking
BibRef
Liu, L.[Li],
Chen, D.[Da],
Shu, M.[Minglei],
Li, B.S.[Bao-Sheng],
Shu, H.Z.[Hua-Zhong],
Paques, M.[Michel],
Cohen, L.D.[Laurent D.],
Trajectory Grouping With Curvature Regularization for Tubular
Structure Tracking,
IP(31), 2022, pp. 405-418.
IEEE DOI
2112
Computational modeling, Trajectory, Biomedical imaging,
Mathematical models, Iron, Oncology, Image segmentation,
graph optimization
BibRef
Choi, W.J.[Woo June],
Yoon, J.K.[Jung-Ki],
Paulson, B.[Bjorn],
Lee, C.H.[Chang-Hoon],
Yim, J.J.[Jae-Joon],
Kim, J.I.[Jong-Il],
Kim, J.K.[Jun Ki],
Image Correlation-Based Method to Assess Ciliary Beat Frequency in
Human Airway Organoids,
MedImg(41), No. 2, February 2022, pp. 374-382.
IEEE DOI
2202
Microscopy, Lung, Temperature measurement, Redundancy,
Image resolution, Estimation, Atmospheric modeling,
motion-contrast imaging
BibRef
Hernández-García, S.[Sergio],
Cuesta-Infante, A.[Alfredo],
Montemayor, A.S.[Antonio S.],
Synthetic Spermatozoa Video Sequences Generation Using Adversarial
Imitation Learning,
IbPRIA23(569-580).
Springer DOI
2307
BibRef
Meng, F.L.[Feng-Ling],
Chen, Y.R.[Yin-Ran],
Luo, X.B.[Xiong-Biao],
Accurate and Robust Sperm Tracking via Adaptive Marginalized Particle
Filtering,
SPLetters(31), 2024, pp. 2020-2024.
IEEE DOI
2408
Trajectory, Histograms, Image color analysis, Color, Target tracking,
Microscopy, Filtering, Infertility, sperm tracking
BibRef
Bragantini, J.[Jordão],
Lange, M.[Merlin],
Royer, L.[Loïc],
Large-scale Multi-hypotheses Cell Tracking Using Ultrametric Contours
Maps,
ECCV24(LXXIX: 36-54).
Springer DOI
2412
BibRef
Acharya, S.[Sayan],
Ganguly, A.[Aditya],
Sarkar, R.[Ram],
Jose, A.[Abin],
Cell Cycle State Prediction Using Graph Neural Networks,
ICIP24(2916-2922)
IEEE DOI
2411
Microscopy, Manuals, Feature extraction, Genetics,
Graph neural networks, Vectors, Convolutional neural networks,
Convolutional Neural Network
BibRef
Weijler, L.[Lisa],
Kowarsch, F.[Florian],
Reiter, M.[Michael],
Hermosilla, P.[Pedro],
Maurer-Granofszky, M.[Margarita],
Dworzak, M.[Michael],
FATE: Feature-Agnostic Transformer-based Encoder for learning
generalized embedding spaces in flow cytometry data,
WACV24(7941-7949)
IEEE DOI Code:
WWW Link.
2404
Training, Analytical models, Microprocessors, Data acquisition,
Computer architecture, Transformers, Data models, Applications
BibRef
Reich, C.[Christoph],
Prangemeier, T.[Tim],
Koeppl, H.[Heinz],
The TYC Dataset for Understanding Instance-Level Semantics and
Motions of Cells in Microstructures,
BioIm23(3942-3953)
IEEE DOI
2401
BibRef
Jang, J.B.[Jun-Bong],
Lee, K.[Kwonmoo],
Kim, T.K.[Tae-Kyun],
Unsupervised Contour Tracking of Live Cells by Mechanical and Cycle
Consistency Losses,
CVPR23(227-236)
IEEE DOI
2309
BibRef
Bribiesca-Sánchez, A.[Andrés],
Guzmán, A.[Adolfo],
Darszon, A.[Alberto],
Corkidi, G.[Gabriel],
Bribiesca, E.[Ernesto],
A Measure of Tortuosity for 3d Curves: Identifying 3d Beating Patterns
of Sperm Flagella,
IbPRIA23(363-374).
Springer DOI
2307
BibRef
Ben-Haim, T.[Tal],
Raviv, T.R.[Tammy Riklin],
Graph Neural Network for Cell Tracking in Microscopy Videos,
ECCV22(XXI:610-626).
Springer DOI
2211
BibRef
Harmanec, A.[Adam],
Kadlecova, Z.[Zuzana],
Sroubek, F.[Filip],
Novel Reconstruction With Inter-Frame Motion Compensation For Fast
Super-Resolution Live Cell Imaging,
ICIP22(3211-3215)
IEEE DOI
2211
TV, Optical microscopy, Microscopy, Superresolution, Lighting,
Motion compensation, Iterative methods, Image reconstruction, optical flow
BibRef
Hayashida, J.[Junya],
Nishimura, K.[Kazuya],
Bise, R.[Ryoma],
Consistent Cell Tracking in Multi-frames with Spatio-Temporal Context
by Object-Level Warping Loss,
WACV22(1759-1768)
IEEE DOI
2202
Tracking, Shape, Motion estimation,
Graphics processing units, Detectors, Cells (biology),
Medical Imaging/Imaging for Bioinformatics/Biological and Cell Microscopy
BibRef
Deng, X.,
Sarkar, R.,
Labruyere, E.,
Olivo-Marin, J.C.,
Srivastava, A.,
Modeling Shape Dynamics During Cell Motility in Microscopy Videos,
ICIP20(2491-2495)
IEEE DOI
2011
Shape, Time series analysis, Biomembranes, Evolution (biology),
Kinematics, Dynamics, Mathematical model, cell migration, amoeboid motion
BibRef
Nishimura, K.[Kazuya],
Hayashida, J.[Junya],
Wang, C.Y.[Chen-Yang],
Ker, D.F.E.[Dai Fei Elmer],
Bise, R.[Ryoma],
Weakly-supervised Cell Tracking via Backward-and-forward Propagation,
ECCV20(XII: 104-121).
Springer DOI
2010
BibRef
Hayashida, J.,
Nishimura, K.,
Bise, R.,
MPM: Joint Representation of Motion and Position Map for Cell
Tracking,
CVPR20(3822-3831)
IEEE DOI
2008
Computer architecture, Microprocessors, Task analysis, Tracking,
Coherence, Feature extraction
BibRef
Anjum, S.,
Gurari, D.,
CTMC: Cell Tracking with Mitosis Detection Dataset Challenge,
Microscopy20(4228-4237)
IEEE DOI
2008
Videos, Viruses (medical), Servers, Benchmark testing,
Insulation life, Degradation, Kidney
BibRef
Almakady, Y.,
Mahmoodi, S.,
Texture-Based Region Tracking Using Gaussian Markov Random Fields for
Cilia Motion Analysis,
ICIP19(1292-1296)
IEEE DOI
1910
Cilia, GMRF, Texture feature, Region tracking, trajectory
BibRef
Ram, S.,
Majdi, M.S.,
Rodríguez, J.J.,
Gao, Y.,
Brooks, H.L.,
Classification of Primary Cilia in Microscopy Images Using
Convolutional Neural Random Forests,
Southwest18(89-92)
IEEE DOI
1809
Forestry, Microscopy, Vegetation, Training, Decision trees,
Image color analysis, Computer architecture,
confocal microscopy
BibRef
Dewan, K.,
Dastidar, T.R.,
Ahmad, M.,
Estimation of Sperm Concentration and Total Motility from Microscopic
Videos of Human Semen Samples,
Microscopy18(2380-23807)
IEEE DOI
1812
Tracking, Trajectory, Microscopy, Videos, Proposals,
Image edge detection, Estimation
BibRef
Shaker, F.,
Monadjemi, S.A.,
Alirezaie, J.,
Classification of human sperm heads using elliptic features and LDA,
IPRIA17(151-155)
IEEE DOI
1712
feature extraction, image classification,
mathematical morphology, medical image processing,
sperm morphology
BibRef
Rempfler, M.[Markus],
Lange, J.H.[Jan-Hendrik],
Jug, F.[Florian],
Blasse, C.[Corinna],
Myers, E.W.[Eugene W.],
Menze, B.H.[Bjoern H.],
Andres, B.[Bjoern],
Efficient Algorithms for Moral Lineage Tracing,
ICCV17(4705-4714)
IEEE DOI
1802
Cell tracking.
biology computing, cellular biophysics, image reconstruction,
image segmentation, image sequences, ray tracing, tree searching,
Transforms
BibRef
Maška, M.,
Matula, P.,
Particle Tracking Accuracy Measurement Based on Comparison of Linear
Oriented Forests,
BioIm17(11-17)
IEEE DOI
1802
Algorithm design and analysis, Atmospheric measurements,
Logic gates, Particle measurements, Particle tracking, Protocols
BibRef
Fortun, D.,
Debroux, N.,
Kervrann, C.,
Spatially-Variant Kernel for Optical Flow Under Low Signal-to-Noise
Ratios Application to Microscopy,
BioIm17(42-48)
IEEE DOI
1802
Adaptive optics, Estimation, Microscopy, Optical imaging,
Optical microscopy, Robustness, Standards
BibRef
Selka, F.,
Blein, T.,
Burguet, J.,
Biot, E.,
Laufs, P.,
Andrey, P.,
Towards a Spatio-Temporal Atlas of 3D Cellular Parameters During Leaf
Morphogenesis,
BioIm17(56-63)
IEEE DOI
1802
Epidermis, Image segmentation, Shape, Sociology, Statistics,
Surface morphology,
BibRef
Lai, Y.,
Kamata, S.i.,
Fu, Z.,
Robust registration of serial cell microscopic images using 3D
Hilbert scan search,
MVA17(530-533)
DOI Link
1708
Adaptive optics, Feature extraction, Microscopy,
Mutual information, Optical imaging, Robustness, Three-dimensional, displays
BibRef
Jug, F.[Florian],
Levinkov, E.[Evgeny],
Blasse, C.[Corinna],
Myers, E.W.[Eugene W.],
Andres, B.[Bjoern],
Moral Lineage Tracing,
CVPR16(5926-5935)
IEEE DOI
1612
Track cells as they move and divide.
BibRef
Matuszewski, D.J.[Damian J.],
Sintorn, I.M.[Ida-Maria],
Puigvert, J.C.[Jordi Carreras],
Wählby, C.[Carolina],
Comparison of Flow Cytometry and Image-Based Screening for Cell Cycle
Analysis,
ICIAR16(623-630).
Springer DOI
1608
BibRef
Medina-Rodríguez, R.[Rosario],
Guzmán-Masías, L.[Luis],
Alatrista-Salas, H.[Hugo],
Beltrán-Castañón, C.[Cesar],
Sperm Cells Segmentation in Micrographic Images Through Lambertian
Reflectance Model,
CAIP15(II:664-674).
Springer DOI
1511
BibRef
Cheng, J.R.[Jie-Rong],
Xiong, W.[Wei],
Gu, Y.[Ying],
Chia, S.C.[Shue-Ching],
Wang, Y.[Yue],
Lim, J.H.[Joo-Hwee],
A Three-Color Coupled Level-Set Algorithm for Simultaneous Multiple
Cell Segmentation and Tracking,
ACCV14(III: 268-283).
Springer DOI
1504
BibRef
Ramesh, N.[Nisha],
Tasdizen, T.[Tolga],
Cell tracking using particle filters with implicit convex shape model
in 4D confocal microscopy images,
ICIP14(446-450)
IEEE DOI
1502
Bayes methods
BibRef
Chakraborty, A.[Anirban],
Roy-Chowdhury, A.K.[Amit K.],
A conditional random field model for tracking in densely packed cell
structures,
ICIP14(451-455)
IEEE DOI
1502
Feature extraction
BibRef
Saha, B.N.,
Ray, N.[Nilanjan],
McArdle, S.[Sara],
Ley, K.[Klaus],
A two-stage minimum spanning tree (MST) based clustering algorithm
for 2D deformable registration of time sequenced images,
ICIP17(1472-1476)
IEEE DOI
1803
Clustering algorithms, Distortion, Entropy, Image registration,
Image sequences, Microscopy,
time sequence imaging
BibRef
McArdle, S.[Sara],
Acton, S.T.[Scott T.],
Ley, K.[Klaus],
Ray, N.[Nilanjan],
Registering sequences of in vivo microscopy images for cell tracking
using dynamic programming and minimum spanning trees,
ICIP14(3547-3551)
IEEE DOI
1502
Dynamic programming
BibRef
Esteves, T.[Tiago],
Carvalho, Â.[Ângela],
Monteiro, F.J.[Fernando Jorge],
Quelhas, P.[Pedro],
Periodic Background Pattern Detection and Removal for Cell Tracking,
ICIAR14(II: 123-131).
Springer DOI
1410
BibRef
Okabe, T.,
Hotta, K.,
Accuracy Improvement of Melanosome Tracking by Error Correction,
DICTA13(1-8)
IEEE DOI
1402
cellular biophysics
BibRef
Kausler, B.X.[Bernhard X.],
Schiegg, M.[Martin],
Andres, B.[Bjoern],
Lindner, M.[Martin],
Koethe, U.[Ullrich],
Leitte, H.[Heike],
Wittbrodt, J.[Jochen],
Hufnagel, L.[Lars],
Hamprecht, F.A.[Fred A.],
A Discrete Chain Graph Model for 3d+t Cell Tracking with High
Misdetection Robustness,
ECCV12(III: 144-157).
Springer DOI
1210
BibRef
Wang, Q.[Quan],
Ou, Y.[Yan],
Julius, A.A.[A. Agung],
Boyer, K.L.[Kim L.],
Kim, M.J.[Min Jun],
Tracking Tetrahymena pyriformis cells using decision trees,
ICPR12(1843-1847).
WWW Link.
1302
BibRef
Chowdhury, A.S.[Ananda S.],
Paul, A.[Angshuman],
Bunyak, F.[Filiz],
Cornelison, D.D.W.,
Palaniappan, K.,
Semi-automated tracking of muscle satellite cells in brightfield
microscopy video,
ICIP12(2825-2828).
IEEE DOI
1302
BibRef
Saha, U.[Utsab],
Singh, R.[Rahul],
Vision-based Tracking of Complex Macroparasites for High-content
Phenotypic Drug Screening,
ISVC12(II: 104-114).
Springer DOI
1209
BibRef
García-Olalla, O.[Oscar],
Alegre, E.[Enrique],
Fernández-Robles, L.[Laura],
García-Ordás, M.T.[María Teresa],
Vitality Assessment of Boar Sperm Using an Adaptive LBP Based on
Oriented Deviation,
CVLBP12(I:61-72).
Springer DOI
1304
BibRef
González-Castro, V.[Víctor],
Alegre, E.[Enrique],
García-Olalla, O.[Oscar],
García-Ordás, D.[Diego],
García-Ordás, M.T.[María Teresa],
Fernández-Robles, L.[Laura],
Curvelet-Based Texture Description to Classify Intact and Damaged Boar
Spermatozoa,
ICIAR12(II: 448-455).
Springer DOI
1206
BibRef
Mkrtchyan, K.,
Singh, D.,
Liu, M.,
Reddy, V.,
Roy-Chowdhury, A.,
Gopi, M.,
Efficient cell segmentation and tracking of developing plant meristem,
ICIP11(2165-2168).
IEEE DOI
1201
BibRef
Chowdhury, A.S.[Ananda S.],
Chatterjee, R.[Rohit],
Ghosh, M.[Mayukh],
Ray, N.[Nilanjan],
Cell Tracking in Video Microscopy Using Bipartite Graph Matching,
ICPR10(2456-2459).
IEEE DOI
1008
BibRef
Iwanowski, M.[Marcin],
Korzynska, A.[Anna],
Segmentation of Moving Cells in Bright Field and Epi-Fluorescent
Microscopic Image Sequences,
ICCVG10(I: 401-410).
Springer DOI
1009
BibRef
Ong, L.L.S.[Lee-Ling S.],
Ang, M.H.[Marcelo H.],
Asada, H.H.[H. Harry],
Tracking of cell population from time lapse and end point confocal
microscopy images with multiple hypothesis Kalman smoothing filters,
MMBIA10(71-78).
IEEE DOI
1006
BibRef
Thirusittampalam, K.[Ketheesan],
Hossain, M.J.[M. Julius],
Ghita, O.[Ovidiu],
Whelan, P.F.[Paul F.],
A Novel Framework for Tracking In-vitro Cells in Time-lapse Phase
Contrast Data,
BMVC10(xx-yy).
HTML Version.
1009
BibRef
Earlier:
Cellular Tracking in Time-Lapse Phase Contrast Images,
IMVIP09(77-82).
IEEE DOI
0909
BibRef
Mohamed, R.[Refaat],
El-Baz, A.[Ayman],
Navalta, J.[James],
Assessment of exercise-induced immune cell apoptosis using
morphological image processing,
ICIP09(2649-2652).
IEEE DOI
0911
BibRef
Quelhas, P.[Pedro],
Mendonça, A.M.[Ana Maria],
Campilho, A.[Aurélio],
Optical Flow Based Arabidopsis Thaliana Root Meristem Cell Division
Detection,
ICIAR10(II: 217-226).
Springer DOI
1006
BibRef
Marcuzzo, M.[Monica],
Guichard, T.[Tiago],
Quelhas, P.[Pedro],
Mendonça, A.M.[Ana Maria],
Campilho, A.[Aurélio],
Cell Division Detection on the Arabidopsis Thaliana Root,
IbPRIA09(168-175).
Springer DOI
0906
BibRef
Marcuzzo, M.[Monica],
Quelhas, P.[Pedro],
Campilho, A.[Ana],
Mendonça, A.M.[Ana Maria],
Campilho, A.[Aurélio],
A Hybrid Approach for Arabidopsis Root Cell Image Segmentation,
ICIAR08(xx-yy).
Springer DOI
0806
BibRef
Marcuzzo, M.[Monica],
Quelhas, P.[Pedro],
Mendonca, A.M.[Ana Maria],
Campilho, A.[Aurelio],
Tracking of Arabidopsis thaliana root cells in time-lapse microscopy,
ICPR08(1-4).
IEEE DOI
0812
BibRef
Sánchez, L.[Lidia],
González, V.[Víctor],
Alegre, E.[Enrique],
Alaiz, R.[Rocío],
Classification and Quantification Based on Image Analysis for Sperm
Samples with Uncertain Damaged/Intact Cell Proportions,
ICIAR08(xx-yy).
Springer DOI
0806
BibRef
Garcia, B.[Bernardo],
Campilho, A.[Ana],
Scheres, B.[Ben],
Campilho, A.[Aurélio],
Automatic Tracking of Arabidopsis thaliana Root Meristem in Confocal
Microscopy,
ICIAR04(II: 166-174).
Springer DOI
0409
BibRef
Nguyen, N.[Nhat],
Keller, S.[Steve],
Huynh, T.[Toan],
Shin, M.[Min],
Tracking colliding cells,
WACV09(1-7).
IEEE DOI
0912
BibRef
Russell, C.[Christopher],
Metaxas, D.N.[Dimitris N.],
Restif, C.[Christophe],
Torr, P.H.S.[Philip H.S.],
Using the Pn Potts model with learning methods to segment live cell
images,
MMBIA07(1-8).
IEEE DOI
0710
BibRef
Nath, S.K.[Sumit K.],
Bunyak, F.[Filiz],
Palaniappan, K.[Kannappan],
Robust Tracking of Migrating Cells Using Four-Color Level Set
Segmentation,
ACIVS06(920-932).
Springer DOI
0609
BibRef
Li, K.[Kang],
Miller, E.D.[Eric D.],
Weiss, L.E.[Lee E.],
Campbell, P.G.[Phil G.],
Kanade, T.[Takeo],
Online Tracking of Migrating and Proliferating Cells Imaged with
Phase-Contrast Microscopy,
MMBIA06(65).
IEEE DOI
0609
BibRef
Yang, G.[Ge],
Matov, A.,
Danuser, G.,
Reliable Tracking of Large Scale Dense Antiparallel Particle Motion for
Fluorescence Live Cell Imaging,
BioInfo05(III: 138-138).
IEEE DOI
0507
BibRef
Kanade, T.[Takeo],
Li, K.[Kang],
Tracking of Migrating and Proliferating Cells in Phase-Contrast
Microscopy Imagery for Tissue Engineering,
CVBIA05(24-24).
Springer DOI
0601
BibRef
Ray, N.,
Dong, G.,
Acton, S.T.,
Tracking Multiple Cells by Correspondence Resolution in a Sequential
Bayesian Framework,
ICIP05(I: 705-708).
IEEE DOI
0512
BibRef
Berkes, P.,
Wiskott, L.,
Applying slow feature analysis to image sequences yields
a rich repertoire of complex cell properties,
ICANN02pp. 81-86.
LNCS 2415, Springer
Springer DOI
BibRef
0000
McNally, J.G.,
Computational optical-sectioning microscopy for 3D quantification of
cell motion: results and challenges,
ICIP94(III: 528-532).
IEEE DOI
9411
BibRef
Chapter on Medical Applications, CAT, MRI, Ultrasound, Heart Models, Brain Models continues in
Extraction and Analysis of Neurons .